[gmx-users] visualizing CONCOORD trayectory

[Ran Friedman]

Hi,

I've managed to view concoord trajectories using VMD by loading the pdb 
file first (dist.pdb) and then the xtc.

Ran.

Nuno R. L. Ferreira wrote:

>----- Original Message ----- 
>From: "Ruben Martinez-Buey" <ruben at akilonia.cib.csic.es>
>To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
>Sent: Monday, May 23, 2005 1:37 PM
>Subject: [gmx-users] visualizing CONCOORD trayectory
>
>
>  
>
>>Hi all,
>>I have generated a CONCOORD trajectory in xtc format (with all atoms
>>included) and I want to see it . Since I have no a tpr file to use  as
>>input for ngmx I cannot see the trayectory. Furthermore, with  VMD  it
>>can be only visualized as one spot/atom, but I cannot see ribbons,
>>trace, wireframe, backbone or any other grahical representation. Do you
>>know how to solve this?
>>    
>>
>
>It seems VMD isn't able to make the bonds between atoms.
>Have you read first a gro file of your system, and only after your xtc traj?
>
>  
>
>>Thanks a lot in advance for your kind attention,
>>Bests,
>>Ruben
>>
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>>    
>>
>
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-- 
------------------------------------------------------
Ran Friedman
Laser Laboratory for Fast Reactions in Biology
Department of Biochemistry
Faculty of Life Sciences
Tel-Aviv University
Tel. +972-3-6409824
Fax. +972-3-6409875
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