[gmx-users] visualizing CONCOORD trayectory

Nuno R. L. Ferreira nunolf at ci.uc.pt
Mon May 23 14:42:19 CEST 2005

----- Original Message ----- 
From: "Ruben Martinez-Buey" <ruben at akilonia.cib.csic.es>
To: "Discussion list for GROMACS users" <gmx-users at gromacs.org>
Sent: Monday, May 23, 2005 1:37 PM
Subject: [gmx-users] visualizing CONCOORD trayectory

> Hi all,
> I have generated a CONCOORD trajectory in xtc format (with all atoms
> included) and I want to see it . Since I have no a tpr file to use  as
> input for ngmx I cannot see the trayectory. Furthermore, with  VMD  it
> can be only visualized as one spot/atom, but I cannot see ribbons,
> trace, wireframe, backbone or any other grahical representation. Do you
> know how to solve this?

It seems VMD isn't able to make the bonds between atoms.
Have you read first a gro file of your system, and only after your xtc traj?

> Thanks a lot in advance for your kind attention,
> Bests,
> Ruben
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