[gmx-users] ldd output

[David]

On Thu, 2005-09-29 at 19:28 +0200, Jeroen Mesters wrote:
> Dear David,
> 
> sorry, lam is not installed!
> 
> I installed directly from the SuSE DVD fftw and fftw-mpi and if you do
> so, you need the package mpich not lam! I checked with yast2 and
> indeed, lam is not installed.
Sorry, I misread it. It may be hard linked. Anyway try mpiexec or if all
else fails recompile from scratch (or wait a few more days for 3.3).
> 
> Cheers, Jeroen.
> > On Thu, 2005-09-29 at 19:07 +0200, Jeroen Mesters wrote:
> >   
> > > Dear David,
> > > 
> > > and here is my ldd output
> > > 
> > > /home/mesters> ldd `which mdrun_mpi`
> > >         linux-gate.so.1 =>  (0xffffe000)
> > >         libnsl.so.1 => /lib/libnsl.so.1 (0x4002f000)
> > >         libsrfftw_mpi.so.2 => /usr/lib/libsrfftw_mpi.so.2 (0x40045000)
> > >         libsfftw_mpi.so.2 => /usr/lib/libsfftw_mpi.so.2 (0x40048000)
> > >         libsrfftw.so.2 => /usr/lib/libsrfftw.so.2 (0x400a2000)
> > >         libsfftw.so.2 => /usr/lib/libsfftw.so.2 (0x400cb000)
> > >         libm.so.6 => /lib/tls/libm.so.6 (0x400fa000)
> > >         libc.so.6 => /lib/tls/libc.so.6 (0x4011e000)
> > >         /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000)
> > > 
> > > I think it was compiled with mpi, would not you agree?
> > >     
> > yes.
> > 
> > but with LAM, now check that you have run lamboot and that you use the
> > correct mpirun (not one from MPICH)
> > 
> >   
> > > Cheers, Jeroen
> > >     
> 
> -- 
> Jeroen Raymundus Mesters, Ph.D.
> Institut fuer Biochemie, Universitaet zu Luebeck
> Ratzeburger Allee 160, D-23538 Luebeck
> Tel: +49-451-5004070, Fax: +49-451-5004068
> E-mail: mesters at biochem.uni-luebeck.de
> Http://www.biochem.uni-luebeck.de
> --
> If you can look into the seeds of time and say
> which grain will grow and which will not - speak then to me  (Macbeth)
> --
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,          75124 Uppsala, Sweden
phone:  46 18 471 4205          fax: 46 18 511 755
spoel at xray.bmc.uu.se    spoel at gromacs.org   http://xray.bmc.uu.se/~spoel
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