[gmx-users] GROMACS on Ubunto

[Itamar Kass]

Shalom David and Erik,

thanks for the quick replay, now it works.

Itamar.

Erik Lindahl wrote:
> Hi,
>
> Try using the full path, e.g. /usr/local/bin/mdrun if you installed 
> from rpm, or /usr/local/gromacs/bin/mdrun if you compiled from source.
>
> Cheers,
>
> Erik
>
> On Aug 8, 2006, at 11:46 AM, Itamar Kass wrote:
>
>> And that means? Or better, how do I overcome it?
>>
>> Itamar.
>>
>> David van der Spoel wrote:
>>> Itamar Kass wrote:
>>>> Shalom all,
>>>>
>>>> I am trying to install GROMACS 3.3.1 on my Ubuntu/dapper machine.  
>>>> The installation is OK, and pdb2gmx as well as grompp are OK also. 
>>>> Still, when I try to run mdrun I got this error message.
>>>>
>>>> mknod: `dm': Permission denied
>>>> mknod: `dm': Permission denied
>>>> mknod: `dm': Permission denied
>>>> mknod: `dm': Permission denied
>>>> mknod: `dm': Permission denied
>>>> mdadm: /dev/md-v not identified in config file.
>>>>
>>>> Any ideas anyone?
>>>>
>>>> Best, Itamar.
>>>>
>>> that's another mdrun program, from the RAID tools.
>>>
>>>
>>
>> --===========================================
>> | Itamar Kass
>> | The Alexander Silberman
>> | Institute of Life Sciences
>> | Department of Biological Chemistry
>> | The Hebrew University, Givat-Ram
>> | Jerusalem, 91904, Israel
>> | Tel: +972-(0)2-6585194
>> | Fax: +972-(0)2-6584329
>> | Email: ikass at cc.huji.ac.il
>> | Net: 
>> http://membranelab.huji.ac.il/itamar_homepage/itamar_homepage.html
>> ============================================
>>
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-- 
===========================================
| Itamar Kass
| The Alexander Silberman
| Institute of Life Sciences
| Department of Biological Chemistry
| The Hebrew University, Givat-Ram
| Jerusalem, 91904, Israel
| Tel: +972-(0)2-6585194
| Fax: +972-(0)2-6584329
| Email: ikass at cc.huji.ac.il
| Net: http://membranelab.huji.ac.il/itamar_homepage/itamar_homepage.html
============================================