[gmx-users] PME scaling
David van der Spoel
spoel at xray.bmc.uu.se
Tue Jan 10 19:41:04 CET 2006
Robert Bjornson wrote:
> I'm experiencing very poor scaling when using PME on gromacs-3.3, and
> looking through the list indicates that this is a known issue with
> that release. However, there was some indication that work has been
> done on parallelizing PME, and that the top of CVS might contain a
> version that is worth trying.
In addition to Erik's answer: can you be more specific? We've seen quite
decent scaling on up to 16 processors, but depending strongly on the
size of the system and the interconnect.
> Has anyone tried this? Did your PME performance improve? If so, did
> you simply take the top of cvs, or is there a tag that is more likely
> to work successfully?
> Rob Bjornson
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David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://xray.bmc.uu.se/~spoel
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