[gmx-users] GROMACS compilation problem

[Daniel Rigden]

Hi Erik

Thanks for the reply.  Yes, I get this

cc (GCC) 4.1.2 20060928 (prerelease) (Ubuntu 4.1.1-13ubuntu5)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is
NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE.

Thanks

Daniel

On Mon, 2007-04-23 at 17:37 +0200, Erik Lindahl wrote:
> Hi Daniel,
> 
> Could you run
> 
> cc --version
> 
> and post the result?  Apparently some new Linux distributions are  
> shipping with a buggy prerelease of gcc.
> 
> Cheers,
> 
> Erik
> 
> On Apr 23, 2007, at 5:21 PM, Daniel Rigden wrote:
> 
> > Dear all
> >
> > I'm trying to compile the latest GROMACS 3.3.1 on the latest Ubuntu
> > Linux.  Due to some fftw installation issue I used
> >
> > ./configure --with-fft=fftpack
> > make
> > make install
> >
> > All seemed to work fine, but any program I try to run now gives me a
> > crash of this kind
> >
> > daniel at adenine: g_clustsize
> >                          :-)  G  R  O  M  A  C  S  (-:
> >
> > *** stack smashing detected ***: g_clustsize terminated
> > Aborted (core dumped)
> >
> > Can anyone help?
> >
> > Thanks
> >
> > Daniel
> >
> >
> > -- 
> > Dr Daniel John Rigden                     Tel:(+44) 151 795 4467
> > School of Biological Sciences             FAX:(+44) 151 795 4406
> > Room 101, Biosciences Building
> > University of Liverpool
> > Crown St.,
> > Liverpool L69 7ZB, U.K.
> >
> >
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-- 
Dr Daniel John Rigden                     Tel:(+44) 151 795 4467
School of Biological Sciences             FAX:(+44) 151 795 4406
Room 101, Biosciences Building
University of Liverpool
Crown St.,
Liverpool L69 7ZB, U.K.