[gmx-users] Re: DOPC lipid bilayer

[Chris Neale]

When posting questions you need to give more information. "I prepared 
dopc.itp parameter file for DOPC lipid bilayer." -- last thing I heard 
you were talking about two very different parameter sets, so I get 
confused. If you are going with the Berger parameters then for arbitrary 
protein ff combinations I have previously posted a method. But be aware 
that using an all atom protein with a united atom lipid model is not 
standard and the fact that I use this combination and that I have posted 
a method to a users-list doesn't in any way imply that it is the correct 
approach.

Information about using oplsaa is here:
http://www.gromacs.org/pipermail/gmx-users/2006-September/023639.html
http://www.gromacs.org/pipermail/gmx-users/2006-May/021416.html