[gmx-users] RMSD

[Dhananjay]

Hello all,

I have 10 pdb files. I want to do simulation on each of them. But before
that I want to check RMSD of each of them with others and want to know  an
average RMSD over all 10 srtuctures. The  pdb files are o/p of
protein-protein docking.

In this case, can I make use of programme g_rms for the RMSD calculations ?

Or any other suggestion/programme please




-- 
Dhananjay C Joshi
Project Assistant
LSB, C D F D
ECIL Road, Nacharam
Hyderabad-500 076, INDIA
Tel : +91-40-27151344
Fax : +91-40-27155610
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