[gmx-users] RMSD

Dhananjay dhananjay.c.joshi at gmail.com
Tue Apr 24 20:23:58 CEST 2007

Hello all,

I have 10 pdb files. I want to do simulation on each of them. But before
that I want to check RMSD of each of them with others and want to know  an
average RMSD over all 10 srtuctures. The  pdb files are o/p of
protein-protein docking.

In this case, can I make use of programme g_rms for the RMSD calculations ?

Or any other suggestion/programme please

Dhananjay C Joshi
Project Assistant
ECIL Road, Nacharam
Hyderabad-500 076, INDIA
Tel : +91-40-27151344
Fax : +91-40-27155610
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20070424/b6d6a214/attachment.html>

More information about the gromacs.org_gmx-users mailing list