[gmx-users] Re: gmx-users Digest, Vol 39, Issue 37

David van der Spoel spoel at xray.bmc.uu.se
Tue Jul 10 09:16:24 CEST 2007

taveechai taveecharoenkool wrote:
> Dear Mark and Gromacs users,
>  Thanks but for do_dssp i also used xxx.pdb file which
> do_dssp program should be ended for a few minutes but
> it doesn't. It seems like it won't end.
>  And because i 'm afraid i cannot use do_dssp in
> Gromacs, i tried to convert dssp file to xpm or any
> format that i can see as picture or table. 
> 1.is there any program to convert dssp file to picture
> format.
> 2. do_dssp in Gromacs, if the program seem to never
> end..... even i think i  declare variable as
> suggestion in manual correctly.... how to do to get
> picture dssp file?
> thanks a lot  

how did you compile the program? could be another gcc 4.1 problem.

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David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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