[gmx-users] protein in hole

[David van der Spoel]

mahbubeh zarrabi wrote:
> dear freinds
>  I have made a hole in POPC128a bilayer and did mdrun
> for popc(make-hole).i merged protein and popc by cat
> command but protein did not put in hole in popc.whould
> you please help me?
> thanks
> 
start with
man cat
you could try by centering the hole and the protein on te same point 
with editconf and then merge them using a text editor

> 
>        
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-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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