[gmx-users] Anisotropic Pressure
David van der Spoel
spoel at xray.bmc.uu.se
Fri Jun 15 20:26:49 CEST 2007
Matteo Guglielmi wrote:
> Hello Folks,
>
> Is there any difference between these two anisotropic pressure setup?
have you tried? if so you know the result. if not, why not?
>
> ### 1st setup ###
>
> pcoupl = berendsen
> pcoupltype = anisotropic
> tau_p = 5.0 5.0 5.0 0.0 0.0 0.0
> compressibility = 4.53e-5 4.53e-5 4.53e-5 0.0 0.0 0.0
> ref_p = 1.025 1.025 1.025 0.0 0.0 0.0
>
>
> ### 2nd setup ###
>
> pcoupl = berendsen
> pcoupltype = anisotropic
> tau_p = 5.0 5.0 5.0 5.0 5.0 5.0
> compressibility = 4.53e-5 4.53e-5 4.53e-5 0.0 0.0 0.0
> ref_p = 1.025 1.025 1.025 1.025 1.025 1.025
>
>
> Which one would you suggest for anisotropic coupling (solvated pore
> immersed into a membrane)
>
>
> Thanks,
> MG.
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
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