[gmx-users] Question about DNA simulation

[David van der Spoel]

Maik Goette wrote:
> David
> 
> I think, I should not contradict to one of the developers, but if your 
> statement is true:
> 1. Where, in fact, are the masses coming from (the masses in the amberFF 
> port can only be found in the atp, as far as I know)?
> 2. Why does GROMACS complain about missing atoms in the atp-file, if I 
> add a new atom type to the nb-section?
> 
> Just out of curiosity...
> 
Hm, no problems contradicting me at least... I presume you're right.

-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
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