[gmx-users] superimpose pdbs

[Yang Ye]

Pymol
http://pldserver1.biochem.queensu.ca/~rlc/work/teaching/BCHM823/pymol/alignment/

It has a bit ease of use than g_confrm that it offers more richer 
choices for selecting atoms to be matched. See what fits to your needs.

Regards,
Yang Ye

On 6/25/2007 1:10 AM, Alan wrote:
> Hi!
>
> It may be a bit GMX off-topic: I am looking for a command line 
> superimpose application that would be able to get all individual pdb 
> files in folder and generated new pdb versions of them 3D superimposed.
>
> Something like what SuperPose 
> (http://wishart.biology.ualberta.ca/SuperPose/help.html) does, but 
> then locally in my computer.
>
> Many thanks in advance.
>
> Cheers,
> Alan
>
> -- 
> Alan Wilter S. da Silva, D.Sc. - CCPN Research Associate
> Department of Biochemistry, University of Cambridge.
> 80 Tennis Court Road, Cambridge CB2 1GA, UK.
> >>http://www.bio.cam.ac.uk/~awd28 <http://www.bio.cam.ac.uk/%7Eawd28><<
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