[gmx-users] cutting out a portion of a crystal using triclinic box

Andrea Robben Browning alrobben at engineering.ucsb.edu
Wed May 2 23:59:19 CEST 2007

I am trying to cut out a portion of a large equilbrated crystal to make 
a smaller crystal.  I have been using the genbox command but since it 
tries to fill up a brick of space and my crystal is triclinic I end up 
will dangling molecules.  Is there any command that can cut a larger 
configuration using a triclinic shape?  I also looked at using the 
editconf command but it didn't actually cut out molecules.


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