[gmx-users] What molecule generator should be used if using GROMOS Force Field?

Mark Abraham Mark.Abraham at anu.edu.au
Tue May 22 15:25:58 CEST 2007


Stéphane Téletchéa wrote:
> WU Yanbin a écrit :
>> Hi, Everyone,
>>   If I use GROMOS force field, what molecule generator, specially the 
>> topology generation, should I use (just like for gromacs force field, 
>> there is PRODRG)?
>>   I have tried to convert gromacs topology to GROMOS topology. The 
>> problem is that some atom type like "CS2" in PEO does noe exist in 
>> GROMOS force field. And GROMOS manual can not be downloaded for free. 
>> Where can I find description for each atom type in GROMOS? Any 
>> suggestions? Thanks in advance.
>>                                              Yours Sincerely,
>>                                                           WU Yanbin
>>
> 
> The manual is downloadable for free:
> http://www.gromacs.org/gromacs/documentation/documentation.html
> 
> You can even have a look at it online:
> http://www.gromacs.org/external/online-reference-manual.html

Actually Stephane, Wu referred to the *GROMOS* manual not being free, 
which is indeed true.

Mark



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