[gmx-users] g_dist problems

Mark Abraham Mark.Abraham at anu.edu.au
Tue May 22 15:26:12 CEST 2007

Edvin Erdtman wrote:
> Hi
> I am doing MD-calculations on double layer lipid membranes. When I 
> wanted to calculate the distance between the com. of the lipids and my 
> molecule with g_dist, the program just stops! Sometimes directly and 
> sometimes after a couple of picoseconds. When checking the output it can 
> end like this:
> 216.0000153    3.7262651    2.1282473    1.1397220   -2.8384237
> 216.5000153    3.7
> Am I doing something wrong?

How can we tell? You haven't given us your command line, or a meaningful 
chunk of output.

> I tried to convert the trajectory using 
> trjconv -pbc, but non of the options seems to work.

They don't work, or they don't fix the above problem? What are you using 
it for anyway?


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