[gmx-users] g_dist problems
Mark.Abraham at anu.edu.au
Tue May 22 15:26:12 CEST 2007
Edvin Erdtman wrote:
> I am doing MD-calculations on double layer lipid membranes. When I
> wanted to calculate the distance between the com. of the lipids and my
> molecule with g_dist, the program just stops! Sometimes directly and
> sometimes after a couple of picoseconds. When checking the output it can
> end like this:
> 216.0000153 3.7262651 2.1282473 1.1397220 -2.8384237
> 216.5000153 3.7
> Am I doing something wrong?
How can we tell? You haven't given us your command line, or a meaningful
chunk of output.
> I tried to convert the trajectory using
> trjconv -pbc, but non of the options seems to work.
They don't work, or they don't fix the above problem? What are you using
it for anyway?
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