[gmx-users] g_dist problems

Edvin Erdtman edvin.erdtman at nat.oru.se
Tue May 22 16:04:20 CEST 2007

Hi again...
> How can we tell? You haven't given us your command line, or a 
> meaningful chunk of output.
my command:

g_dist -f traj.xtc -n index.ndx -s topol.tpr

The output:
Select a group: 0
Selected 0: 'DPPC'
Select a group: 1
Selected 1: 'AL'
Reading frame       0 time    0.000  
Back Off! I just backed up dist.xvg to ./#dist.xvg.1#
Reading frame     400 time  200.000  

-and then it stops! I need to hit ctrl-c

dist.xvg ends:
 216.0000153    3.7260792    2.1281288    1.1397107   -2.8382730

>> I tried to convert the trajectory using trjconv -pbc, but non of the 
>> options seems to work.
I thought that it maybe would help. Someone else (who had send a message 
to this list Bug ? in PBC in g_dist, July 2006) had some problems with 
g_dist and tried to convert the trajectory.

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