[gmx-users] gmx 3.3.2 explodes with libc.so.6

David van der Spoel spoel at xray.bmc.uu.se
Thu Nov 8 18:35:28 CET 2007


Yang Ye wrote:
> got solved?
> 
> I am using Ubuntu 6.10 after updating its packages, gromacs still fail 
> on the simple/rb1 test, in a symptom similar to Li Qiang's.
> 3.3.1 is able to pass all the tests.
> 
> Another thing is that acetonitrilRF also failed in 3.3.2 (both on 
> Opteron and P4) but not with 3.3.1
> -------------------------------------------------------
> Program mdrun, VERSION 3.3.2
> Source code file: network.c, line: 437
> 
> Routine should not have been called:
> gmx_sumi
> -------------------------------------------------------
> 
> Perhaps gmx-developer is a better place for this thread.

i've fixed this in CVS and posted a fix on the mailing lisst as well.

> 
> Regards,
> Yang Ye
> 
> On 11/8/2007 5:03 AM, Dmytro Kovalskyy wrote:
>> The problem was solved by updating system libraries.
>>
>> [root at dhome exchange]# rpm -qf /lib/libc.so.6
>> glibc-core-2.5-alt5
>>
>> Sorry, for wrong hypothesis.
>>
>> Dima
>>
>> _______________________________________________
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://www.gromacs.org/mailman/listinfo/gmx-users
>> Please search the archive at http://www.gromacs.org/search before 
>> posting!
>> Please don't post (un)subscribe requests to the list. Use the www 
>> interface or send it to gmx-users-request at gromacs.org.
>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>>
>>
>>   
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www 
> interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php


-- 
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,  	75124 Uppsala, Sweden
phone:	46 18 471 4205		fax: 46 18 511 755
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++



More information about the gromacs.org_gmx-users mailing list