[gmx-users] gmx 3.3.2 explodes with libc.so.6
David van der Spoel
spoel at xray.bmc.uu.se
Thu Nov 8 18:35:28 CET 2007
Yang Ye wrote:
> got solved?
>
> I am using Ubuntu 6.10 after updating its packages, gromacs still fail
> on the simple/rb1 test, in a symptom similar to Li Qiang's.
> 3.3.1 is able to pass all the tests.
>
> Another thing is that acetonitrilRF also failed in 3.3.2 (both on
> Opteron and P4) but not with 3.3.1
> -------------------------------------------------------
> Program mdrun, VERSION 3.3.2
> Source code file: network.c, line: 437
>
> Routine should not have been called:
> gmx_sumi
> -------------------------------------------------------
>
> Perhaps gmx-developer is a better place for this thread.
i've fixed this in CVS and posted a fix on the mailing lisst as well.
>
> Regards,
> Yang Ye
>
> On 11/8/2007 5:03 AM, Dmytro Kovalskyy wrote:
>> The problem was solved by updating system libraries.
>>
>> [root at dhome exchange]# rpm -qf /lib/libc.so.6
>> glibc-core-2.5-alt5
>>
>> Sorry, for wrong hypothesis.
>>
>> Dima
>>
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>
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--
David.
________________________________________________________________________
David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596, 75124 Uppsala, Sweden
phone: 46 18 471 4205 fax: 46 18 511 755
spoel at xray.bmc.uu.se spoel at gromacs.org http://folding.bmc.uu.se
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