[gmx-users] gmx 3.3.2 explodes with libc.so.6

[Yang Ye]

Regarding the failed test for simple/rb1, I used dmalloc and the message is

realloc for g->edge[0] (24 bytes, file mshift.c, line 251, 
g->edge[0]=0x0x       1)

the line in mshift.c is
srenew(g->edge[0],n);

Regards,.
Yang Ye

On 11/9/2007 1:35 AM, David van der Spoel wrote:
> Yang Ye wrote:
>> got solved?
>>
>> I am using Ubuntu 6.10 after updating its packages, gromacs still 
>> fail on the simple/rb1 test, in a symptom similar to Li Qiang's.
>> 3.3.1 is able to pass all the tests.
>>
>> Another thing is that acetonitrilRF also failed in 3.3.2 (both on 
>> Opteron and P4) but not with 3.3.1
>> -------------------------------------------------------
>> Program mdrun, VERSION 3.3.2
>> Source code file: network.c, line: 437
>>
>> Routine should not have been called:
>> gmx_sumi
>> -------------------------------------------------------
>>
>> Perhaps gmx-developer is a better place for this thread.
>
> i've fixed this in CVS and posted a fix on the mailing lisst as well.
>
>>
>> Regards,
>> Yang Ye
>>
>> On 11/8/2007 5:03 AM, Dmytro Kovalskyy wrote:
>>> The problem was solved by updating system libraries.
>>>
>>> [root at dhome exchange]# rpm -qf /lib/libc.so.6
>>> glibc-core-2.5-alt5
>>>
>>> Sorry, for wrong hypothesis.
>>>
>>> Dima
>>>
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