[gmx-users] g_rmsf

Mark Abraham Mark.Abraham at anu.edu.au
Mon Apr 7 16:05:37 CEST 2008

SWAPNA wrote:
> Dear gmx users,
> I have a basic query.
> With respect to which structure are the rmsf values calculated per each 
> atom?
> is it w.r.t average structure of the protein or the reference structure 
> that we provide using -s option?
> I dont find any explanation of the output generated using g_rmsf. Please 
> make this clear.

Look at g_rmsf -h because the reference structure is explained there.


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