[gmx-users] g_rmsf

[Mark Abraham]

SWAPNA wrote:
> Dear gmx users,
> 
> I have a basic query.
> With respect to which structure are the rmsf values calculated per each 
> atom?
> 
> is it w.r.t average structure of the protein or the reference structure 
> that we provide using -s option?
> 
> I dont find any explanation of the output generated using g_rmsf. Please 
> make this clear.

Look at g_rmsf -h because the reference structure is explained there.

Mark