[gmx-users] difference between my_dssp and do_dssp

David van der Spoel spoel at xray.bmc.uu.se
Fri Jan 11 11:03:58 CET 2008

ABEL Stephane 175950 wrote:
> Thanks David for his last response
> I am a newbie in GROMACS command, and i have a question. What is the difference between do_dssp and my_dssp ? found in some GROMACS tutorial. I can not find the last one in the gromacs 3.3.2 distribution
Use do_dssp. my_dssp was a hack to make it faster but that is not 
necessary anymore due to faster computers. It has been removed from the 

> Thank a lot 
> Stefane
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David van der Spoel, Ph.D.
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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