[gmx-users] image control
myunggi at gmail.com
Tue Jan 15 15:51:20 CET 2008
I'm running NPT simulation POPC with a short peptide.
I see the long bonds across the unit cell in VMD.
Why am I getting broken lipid molecules in the trajectory (original .xtc
file w/o any post-modification)?
Some lipids move whole molecules, but some are broken.
How can I control the unit of image?
I couldn't find any related word in the manual.
I assume image will be done by "residue".
Then I shouldn't get this strange result.
I got the popc.itp from Dr. Tieleman's web site.
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306
Office: (850) 645-1334
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users