[gmx-users] image control

Myunggi Yi myunggi at gmail.com
Tue Jan 15 15:51:20 CET 2008

Dear users,

I'm running NPT simulation POPC with a short peptide.
I see the long bonds across the unit cell in VMD.
Why am I getting broken lipid molecules in the trajectory (original .xtc
file w/o any post-modification)?

Some lipids move whole molecules, but some are broken.
How can I control the unit of image?
I couldn't find any related word in the manual.

I assume image will be done by "residue".
Then I shouldn't get this strange result.

I got the popc.itp from Dr. Tieleman's web site.
Any idea?

Best wishes,

KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306

Office: (850) 645-1334
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