[gmx-users] Re: Go-model Hamiltonian (Xavier Periole)

Xavier Periole X.Periole at rug.nl
Wed Jan 16 22:01:31 CET 2008

On Wed, 16 Jan 2008 13:07:27 -0600
  eddie mendel <pckboy at gmail.com> wrote:
> Hello. In the website server, I provide my
> email, some workid and submit the pdb file.
> A window appears, in which it says:
> *Go model built.
> Email will be sent to eduardo.mendez at usask.ca.
> Thank you for using MMTSB Web Services.
> *I have tried many different emails, but I dont get any thing in the email.

That might be due to many things. Did you contact "them" to find out
what the problem is? I am sure they would appreciate the info.

> Eduardo
> I was planning to use CHARMM but I found a problem at a server that builds
>> the respective  Go-model Hamiltonian from a pdb  file
> I do not know anybody who as used a Go-model in GMX but it should not be
> so difficult using tabulated potentials!
>> > this is the website in case you are interested: 
>> >http://mmtsb.scripps.edu/webservices/gomodel.html
> What is wrong with the website server? Does it give a wrong "topology"?
> We have been using it for a peptide and that would be nice if you could
> detail the "bug".
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface 
>or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

XAvier Periole - PhD

NMR & Molecular Dynamics Group
University of Groningen
The Netherlands

More information about the gromacs.org_gmx-users mailing list