[gmx-users] Re: Go-model Hamiltonian (Xavier Periole)

[Xavier Periole]

On Wed, 16 Jan 2008 13:07:27 -0600
  eddie mendel <pckboy at gmail.com> wrote:
> Hello. In the website server, I provide my
> email, some workid and submit the pdb file.
> 
> A window appears, in which it says:
> 
> *Go model built.
> 
> Email will be sent to eduardo.mendez at usask.ca.
> 
> Thank you for using MMTSB Web Services.
> 
> *I have tried many different emails, but I dont get any thing in the email.

That might be due to many things. Did you contact "them" to find out
what the problem is? I am sure they would appreciate the info.

XAvier
> 
> Eduardo
> 
> 
> I was planning to use CHARMM but I found a problem at a server that builds
>> the respective  Go-model Hamiltonian from a pdb  file
> 
> 
> I do not know anybody who as used a Go-model in GMX but it should not be
> so difficult using tabulated potentials!
> 
> 
>> > this is the website in case you are interested: 
>> >http://mmtsb.scripps.edu/webservices/gomodel.html
>>   
> 
> What is wrong with the website server? Does it give a wrong "topology"?
> We have been using it for a peptide and that would be nice if you could
> detail the "bug".
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-----------------------------------------------------
XAvier Periole - PhD

NMR & Molecular Dynamics Group
University of Groningen
The Netherlands
http://md.chem.rug.nl/~periole
-----------------------------------------------------