[gmx-users] installation problem for MAC OS

Yunan Yan yayan at chemie.fu-berlin.de
Wed Jan 23 14:24:11 CET 2008


Dear all,

I have difficulties when I try to
install Gromacs 3.3.2 in my MAC OS.
Please see the following for details.

configuration:

$ ./configure CC=icc CXX=icc F77=ifort
--prefix=/Users/yunan/usr/local/Gromacs  --with-qmmm-cpmd --with-fft=fftw3
CLAGS=-no-multibyte-chars CPP=/usr/bin/cpp

System information:

uname -m = i386
uname -r = 9.1.0
uname -s = Darwin
uname -v = Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
root:xnu-1228.0.2~1/RELEASE_I386
/usr/bin/hostinfo      = Mach kernel version:
     Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
root:xnu-1228.0.2~1/RELEASE_I386
Kernel configured for up to 8 processors.
8 processors are physically available.
8 processors are logically available.
Processor type: i486 (Intel 80486)
configure:3291: icc -V
Intel(R) C Compiler for applications running on IA-32, Version 10.1
Build 20070913 Package ID: m_cc_p_10.1.006
Copyright (C) 1985-2007 Intel Corporation.  All rights reserved.

Error:
icc -funroll-all-loops -I/Users/yunan/usr/local/lib -framework Accelerate
-o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o
sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o toputil.o
topdirs.o grompp.o compute_io.o  ../mdlib/.libs/libmd.a -L/usr/X11/lib
../gmxlib/.libs/libgmx.a -lfftw3f /usr/X11/lib/libSM.6.0.0.dylib
/usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib
/usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib
ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section
__TEXT,__text reloc 1: bad pc-rel vanilla relocation length

The same will happen when I use gcc compiler.
Does someone have some ideas about what's going on
here and how to figure it out?

Thanks a lot.

Best regards,
Yun-an




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