[gmx-users] installation problem for MAC OS
Per Larsson
per.larsson at sbc.su.se
Wed Jan 23 15:17:24 CET 2008
Hello!
A quick fix so that you will be able to compile, is to try to run the
configure script with the flag --disable-ia32-sse.
Hopefully you should get a working installation, but with no sse-
support (which might be what you want :-)
Cheers
/Per
23 jan 2008 kl. 14.24 skrev Yunan Yan:
>
> Dear all,
>
> I have difficulties when I try to
> install Gromacs 3.3.2 in my MAC OS.
> Please see the following for details.
>
> configuration:
>
> $ ./configure CC=icc CXX=icc F77=ifort
> --prefix=/Users/yunan/usr/local/Gromacs --with-qmmm-cpmd --with-
> fft=fftw3
> CLAGS=-no-multibyte-chars CPP=/usr/bin/cpp
>
> System information:
>
> uname -m = i386
> uname -r = 9.1.0
> uname -s = Darwin
> uname -v = Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
> root:xnu-1228.0.2~1/RELEASE_I386
> /usr/bin/hostinfo = Mach kernel version:
> Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;
> root:xnu-1228.0.2~1/RELEASE_I386
> Kernel configured for up to 8 processors.
> 8 processors are physically available.
> 8 processors are logically available.
> Processor type: i486 (Intel 80486)
> configure:3291: icc -V
> Intel(R) C Compiler for applications running on IA-32, Version 10.1
> Build 20070913 Package ID: m_cc_p_10.1.006
> Copyright (C) 1985-2007 Intel Corporation. All rights reserved.
>
> Error:
> icc -funroll-all-loops -I/Users/yunan/usr/local/lib -framework
> Accelerate
> -o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o
> sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o
> toputil.o
> topdirs.o grompp.o compute_io.o ../mdlib/.libs/libmd.a -L/usr/X11/lib
> ../gmxlib/.libs/libgmx.a -lfftw3f /usr/X11/lib/libSM.6.0.0.dylib
> /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib
> /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib
> ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section
> __TEXT,__text reloc 1: bad pc-rel vanilla relocation length
>
> The same will happen when I use gcc compiler.
> Does someone have some ideas about what's going on
> here and how to figure it out?
>
> Thanks a lot.
>
> Best regards,
> Yun-an
>
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