[gmx-users] simulating Ubiquitinated protein

[David van der Spoel]

AJIT DATTA wrote:
> Hi 
> I am trying to do MD simulation of a ubiquitinated protein. (C-terminal linked to a lysine residue via an isopeptide bond).
> But I am not being able to define the isopeptide link. can someone help me out in this?
> 
> Ajit B.
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-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se