[gmx-users] Unable to view trajectory in pymol or vmd

David van der Spoel spoel at xray.bmc.uu.se
Tue Oct 14 08:10:59 CEST 2008

vivek sharma wrote:
> Hi There,
> I have few MD trajectory, I want to analyze them visually (other than 
> ngmx option as it gives very few option).
> I tried for opening those trajectories in vmd and pymol but not able to 
> view them. It shows me the trajectory loaded, but not viewing anything.
> Is there any check to be doen for viewing trajectory in these 
> visualization tools ?
> Or is it because of the size of the trajectory as I am having 
> trajectories of around 10 nsec.

did you load a pdb file too?
> Please suggest.
> With Thanks,
> Vivek
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David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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