[gmx-users] Unable to view trajectory in pymol or vmd

[vivek sharma]

Hi David,
Thanks for your response.
I was not loading any pdb file. Do I need to do so ?
& where ?

With Thanks,
Vivek

2008/10/14 David van der Spoel <spoel at xray.bmc.uu.se>

> vivek sharma wrote:
>
>> Hi There,
>>
>> I have few MD trajectory, I want to analyze them visually (other than ngmx
>> option as it gives very few option).
>> I tried for opening those trajectories in vmd and pymol but not able to
>> view them. It shows me the trajectory loaded, but not viewing anything.
>> Is there any check to be doen for viewing trajectory in these
>> visualization tools ?
>>
>> Or is it because of the size of the trajectory as I am having trajectories
>> of around 10 nsec.
>>
>
> did you load a pdb file too?
>
>>
>> Please suggest.
>>
>> With Thanks,
>> Vivek
>>
>>
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>
>
> --
> David van der Spoel, Ph.D., Professor of Biology
> Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: +4618511755.
> spoel at xray.bmc.uu.se    spoel at gromacs.org   http://folding.bmc.uu.se
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