[gmx-users] Unable to view trajectory in pymol or vmd

MQO.Carlos Javier Nunez Aguero carlosjavierna at gmail.com
Tue Oct 14 08:22:40 CEST 2008


1. Load the *.gro file
2. Load the *.trr file

See the Amber basic workshop - tutorial 2 for more ideas:



2008/10/14 vivek sharma <viveksharma.iitb at gmail.com>

> Hi There,
> I have few MD trajectory, I want to analyze them visually (other than ngmx
> option as it gives very few option).
> I tried for opening those trajectories in vmd and pymol but not able to
> view them. It shows me the trajectory loaded, but not viewing anything.
> Is there any check to be doen for viewing trajectory in these visualization
> tools ?
> Or is it because of the size of the trajectory as I am having trajectories
> of around 10 nsec.
> Please suggest.
> With Thanks,
> Vivek
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20081014/ecb5f28f/attachment.html>

More information about the gromacs.org_gmx-users mailing list