[gmx-users] Unable to view trajectory in pymol or vmd

[MQO.Carlos Javier Nunez Aguero]

Hi,
In VMD:

1. Load the *.gro file
2. Load the *.trr file

See the Amber basic workshop - tutorial 2 for more ideas:

http://ambermd.org/tutorials/basic/tutorial2/

regards,
Carlos





2008/10/14 vivek sharma <viveksharma.iitb at gmail.com>

> Hi There,
>
> I have few MD trajectory, I want to analyze them visually (other than ngmx
> option as it gives very few option).
> I tried for opening those trajectories in vmd and pymol but not able to
> view them. It shows me the trajectory loaded, but not viewing anything.
> Is there any check to be doen for viewing trajectory in these visualization
> tools ?
>
> Or is it because of the size of the trajectory as I am having trajectories
> of around 10 nsec.
>
> Please suggest.
>
> With Thanks,
> Vivek
>
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