[gmx-users] Unable to view trajectory in pymol or vmd

[David van der Spoel]

vivek sharma wrote:
> Hi David,
> Thanks for your response.
> I was not loading any pdb file. Do I need to do so ?
> & where ?
previous poster just explained
in VMD load pdb then load traj.xtc or traj.trr

> 
> With Thanks,
> Vivek
> 
> 2008/10/14 David van der Spoel <spoel at xray.bmc.uu.se 
> <mailto:spoel at xray.bmc.uu.se>>
> 
>     vivek sharma wrote:
> 
>         Hi There,
> 
>         I have few MD trajectory, I want to analyze them visually (other
>         than ngmx option as it gives very few option).
>         I tried for opening those trajectories in vmd and pymol but not
>         able to view them. It shows me the trajectory loaded, but not
>         viewing anything.
>         Is there any check to be doen for viewing trajectory in these
>         visualization tools ?
> 
>         Or is it because of the size of the trajectory as I am having
>         trajectories of around 10 nsec.
> 
> 
>     did you load a pdb file too?
> 
> 
>         Please suggest.
> 
>         With Thanks,
>         Vivek
> 
> 
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> 
>     -- 
>     David van der Spoel, Ph.D., Professor of Biology
>     Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
>     Box 596, 75124 Uppsala, Sweden. Phone:  +46184714205. Fax: +4618511755.
>     spoel at xray.bmc.uu.se <mailto:spoel at xray.bmc.uu.se>  
>      spoel at gromacs.org <mailto:spoel at gromacs.org>   http://folding.bmc.uu.se
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-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se