[gmx-users] mdrun_mpi error Signal: Segmentation fault

nam kim namkkim at gmail.com
Sat Apr 11 01:28:50 CEST 2009


I have segmentation fault error while running mdrun_mpi( gromacs 4.0.4).
I have installed gromacs 4.0.4 two month ago and been working fine.
Today, I just got Segment errors. Rebooting does not much help.

Here is log:

[rd:06790] *** Process received signal ***
[d:06790] Signal: Segmentation fault (11)
[rd:06790] Signal code:  (128)
[rd:06790] Failing at address: (nil)
[rd:06790] [ 0] /lib64/tls/libpthread.so.0 [0x36bc30c430]
[rd:06790] [ 1] /lib64/ld-linux-x86-64.so.2 [0x36bb607496]
[rd:06790] [ 2] /lib64/ld-linux-x86-64.so.2 [0x36bb60789e]
[rd:06790] [ 3] /lib64/ld-linux-x86-64.so.2 [0x36bb60a68a]
[rd:06790] [ 4] /lib64/ld-linux-x86-64.so.2 [0x36bb60a552]
[rd:06790] [ 5]
/usr/local/topspin/lib64/libvapi.so(vipul_cleanup+0x50) [0x2a984472b0]
[rd:06790] [ 6] /usr/local/topspin/lib64/libvapi.so [0x2a98440c32]
[rd:06790] *** End of error message ***


Thanks



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