[gmx-users] cluster graph

Tsjerk Wassenaar tsjerkw at gmail.com
Wed Aug 19 12:09:57 CEST 2009


According to the urban dictionary:

II. Defining 'Noob'
Contrary to the belief of many, a noob/n00b and a newbie/newb are not
the same thing. Newbs are those who are new to some task* and are very
beginner at it, possibly a little overconfident about it, but they are
willing to learn and fix their errors to move out of that stage.
n00bs, on the other hand, know little and have no will to learn any
more. They expect people to do the work for them and then expect to
get praised about it, and make up a unique species of their own. It is
the latter we will study in this guide so that the reader is prepared
to encounter them in the wild if needed.

So, it is by unfortunate chance that the address says "noob noob", or
is it characteristic?

The hash character (#) is close to universally be used for "number",
which makes the labels read:

"Number of structures" versus "Cluster number"



On Wed, Aug 19, 2009 at 10:37 AM, noob noob<eyemnoob2008 at hotmail.com> wrote:
> Dear all,
> I am difficulty to understand the lable of the cluster size,
> what is the y-axis (labelled #structure) and x-axis (labelled as cluster#).
> what does the lable means?
> I used this command
> g_cluster -f md.xtc -s md.tpr -method gromos -o cluster.xvg
> thanks for comments...
> Thanks..
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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