[gmx-users] Reproducing Chain Tilt on DPPC gel phase with Martini FF
XAvier Periole
x.periole at rug.nl
Thu Dec 10 10:08:37 CET 2009
On Dec 9, 2009, at 11:21 PM, César Ávila wrote:
> Dear all,
> I would like to simulate a DPPC membrane in gel phase using Martini
> Force Field. As stated on
>
> "Simulation of gel phase formation and melting in lipid bilayers
> using a coarse grained model", CPL 135 (2005) 223-244
>
> the correct 30º angle chain tilt for DPPC might be reproduced by
> reducing the acyl chain spheres volume by 10%.
> So far, I have tried changing sigma and epsilon for C1-C1 pair
> interaction without success.
The sphere volume or radius is defined by sigma. Epsilon deals with the
strength of the interactions; you do not want to modify it.
Did you try to contact the authors? They might be of better
help!
>
> Best regards
> Cesar Avila
>
>
> --
> gmx-users mailing list gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before
> posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
More information about the gromacs.org_gmx-users
mailing list