[gmx-users] mpispawn.c:303 Unexpected exit status

[shivkumar bale]

Hi Justin,

Sorry about the email. I just made a mistake while posting.

First of all, Thanks for replying.

I tried the suggestions you gave like I changed the pbc from full to xyz,
removed -Dflex term and also changed the fourier grid spacing but still I am
getting the same error. I am attaching the error message with this email.
Have a look at it. If you need any more information let me know.

Thanks for your help.

Regards

Shivkumar


On Tue, Dec 8, 2009 at 5:53 AM, Justin A. Lemkul <jalemkul at vt.edu> wrote:

>
> You haven't addressed any of the comments or questions I posted earlier:
>
> http://lists.gromacs.org/pipermail/gmx-users/2009-December/047294.html
>
> When asking for free help, demonstrate that you're willing to take the
> advice you're given, and if that fails, state what problems remain.
>  Otherwise, it seems like you're ignoring viable suggestions.
>
> For the sake of being explicit: your .mdp file is wrong, and the dynamics
> are likely spurious.  Solve these issues (which I have described for you!)
> before moving to a more peripherally-related solution.  Also check the .log
> file; as I said before, Gromacs rarely exits without offering its own error
> messages about what's going wrong.  There is nothing in this output that
> immediately suggests your PME spacing is remotely at fault, but other
> parameters in your .mdp file are clearly wrong.
>
> -Justin
>
> shivkumar bale wrote:
>
>> Hi Gromacs Users,
>>
>> The error:
>>
>> mpispawn.c:303 Unexpected exit status
>>
>> Child exited abnormally!
>> Killing remote processes...DONE
>>
>> Following is the link which might help:
>>
>> http://www.ece.unm.edu/~etanner/MPI.html <
>> http://www.ece.unm.edu/%7Eetanner/MPI.html<http://www.ece.unm.edu/~etanner/MPI.html>>
>>
>>
>>
>>
>> I think the above error is because of the PME calculations and changing
>> the grid spacing might work. But I dont know how to change the grid spacing.
>> Do you have any idea regarding that? Or if you think the error is due to
>> some other reason let me know.
>>
>> I am attaching the .mdp file with this email.
>>
>> Thanks for the help.
>>
>> Regards
>>
>> Shivkumar
>>
>>
> --
> ========================================
>
> Justin A. Lemkul
> Ph.D. Candidate
> ICTAS Doctoral Scholar
> MILES-IGERT Trainee
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
> ========================================
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20091210/d2f7ee02/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: CB_20Bulk.o72899
Type: application/octet-stream
Size: 1809 bytes
Desc: not available
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20091210/d2f7ee02/attachment.obj>