[gmx-users] plot of mutual orienatation

Justin A. Lemkul jalemkul at vt.edu
Fri Dec 11 20:03:11 CET 2009

Nilesh Dhumal wrote:
> Hey All,
> I am trying to analyze the results of my simulation. I have used the ionic
> liquid as a solvent which have five member ring. I have a glucose molecule
> surrounded by ionic liquids. I want to see to plot a angle between the
> center of mass of glucose and center of five member ring.  How can I plot
> the angle between the center of mass of five member sing sothat I   can
> study of orientation of ionic liquids in presence and absence of glucose.
> I have run the simulation only of ionic liquids. I tried with g_angle.

Try g_sgangle.


> Nilesh


Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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