[gmx-users] error with changing pdb file

[Justin A. Lemkul]

ksm tprk wrote:
> Hi Justin,
> 
> I got same error before.
> 

The solution is still the same.  You have listed all of your carbon atom types 
as simply "C" which corresponds to a bare carbon (carbonyl, etc) and if you 
search in ffgmxbon.itp for an angle involving three of these atoms, you won't 
find any.  Choose a suitable atom type for these atoms and look for available 
parameters in ffgmxbon.itp.

-Justin

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================