[gmx-users] (no subject)

Mark Abraham Mark.Abraham at anu.edu.au
Wed Dec 23 11:55:47 CET 2009

Mohammad Ghahramanpour wrote:
> Hi all
> I want to insert two copies of my protein on the either side of the 
> membrane.
> For insertion a single protein I used VMD and then the new desired 
> protein coordination emerged in the membrane by using /genbox /command. 
> But when I used the same procedure for two copies of the protein I have 
> faced  fatal error (The second copy of the protein was not solvated in 
> the membarne box.
> Would you please suggest me right method to insert my protein into lipid 
> bilayer in proper orientation?

I'd guess that if you construct a PDB file with the two proteins already 
the right distance apart, and solvate that in the normal way, you'll be 


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