[gmx-users] (no subject)
Mark.Abraham at anu.edu.au
Wed Dec 23 11:55:47 CET 2009
Mohammad Ghahramanpour wrote:
> Hi all
> I want to insert two copies of my protein on the either side of the
> For insertion a single protein I used VMD and then the new desired
> protein coordination emerged in the membrane by using /genbox /command.
> But when I used the same procedure for two copies of the protein I have
> faced fatal error (The second copy of the protein was not solvated in
> the membarne box.
> Would you please suggest me right method to insert my protein into lipid
> bilayer in proper orientation?
I'd guess that if you construct a PDB file with the two proteins already
the right distance apart, and solvate that in the normal way, you'll be
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