[gmx-users] template

[Alexander Malafeev]

Hi, Dear Gromacs users, I try to compile gromacs template by typing "make
template" as said in gromacs FAQ, but I have a lot of errors.

> make template
> cc     template.c   -o template
> template.c:40:22: error: statutil.h: No such file or directory
> template.c:41:22: error: typedefs.h: No such file or directory
> template.c:42:21: error: smalloc.h: No such file or directory
> template.c:43:17: error: vec.h: No such file or directory
> template.c:44:22: error: copyrite.h: No such file or directory
> template.c:46:19: error: tpxio.h: No such file or directory
> template.c: In function 'main':
> template.c:69: error: 't_pargs' undeclared (first use in this function)
> template.c:69: error: (Each undeclared identifier is reported only once
> template.c:69: error: for each function it appears in.)
> template.c:69: error: expected ';' before 'pa'
> template.c:75: error: 't_topology' undeclared (first use in this function)
> template.c:75: error: expected ';' before 'top'
> template.c:76: error: 'STRLEN' undeclared (first use in this function)
> template.c:77: error: 't_trxframe' undeclared (first use in this function)
> template.c:77: error: expected ';' before 'fr'
> template.c:78: error: 'rvec' undeclared (first use in this function)
> template.c:78: error: 'xtop' undeclared (first use in this function)
> template.c:79: error: 'matrix' undeclared (first use in this function)
> template.c:79: error: expected ';' before 'box'
> template.c:81: error: 'TRX_READ_X' undeclared (first use in this function)
> template.c:83: error: 't_filenm' undeclared (first use in this function)
> template.c:83: error: expected ';' before 'fnm'
> template.c:90: error: 'stderr' undeclared (first use in this function)
> template.c:94: error: 'PCA_CAN_TIME' undeclared (first use in this
> function)
> template.c:94: error: 'PCA_CAN_VIEW' undeclared (first use in this
> function)
> template.c:95: error: 'fnm' undeclared (first use in this function)
> template.c:95: error: 'pa' undeclared (first use in this function)
> template.c:95: error: 'NULL' undeclared (first use in this function)
> template.c:103: error: 'efTPS' undeclared (first use in this function)
> template.c:103: error: 'top' undeclared (first use in this function)
> template.c:103: error: 'box' undeclared (first use in this function)
> template.c:103: error: 'TRUE' undeclared (first use in this function)
> template.c:110: warning: incompatible implicit declaration of built-in
> function 'printf'
> template.c:111: warning: incompatible implicit declaration of built-in
> function 'exit'
> template.c:114: warning: incompatible implicit declaration of built-in
> function 'printf'
> template.c:118: error: 'efTRX' undeclared (first use in this function)
> template.c:118: error: 'fr' undeclared (first use in this function)
> template.c:127: error: 'XX' undeclared (first use in this function)
> template.c:127: error: 'YY' undeclared (first use in this function)
> template.c:127: error: 'ZZ' undeclared (first use in this function)
> make: *** [template] Error 1
> alex at nomad:~/gromacs_src/gromacs-3.3.3/share/template$ vim Makefile.am
> alex at nomad:~/gromacs_src/gromacs-3.3.3/share/template$ vim Makefile.in
> alex at nomad:~/gromacs_src/gromacs-3.3.3/share/template$ vim Makefile.am
> alex at nomad:~/gromacs_src/gromacs-3.3.3/share/template$ make template
> cc     template.c   -o template
> template.c:40:22: error: statutil.h: No such file or directory
> template.c:41:22: error: typedefs.h: No such file or directory
> template.c:42:21: error: smalloc.h: No such file or directory
> template.c:43:17: error: vec.h: No such file or directory
> template.c:44:22: error: copyrite.h: No such file or directory
> template.c:46:19: error: tpxio.h: No such file or directory
> template.c: In function 'main':
> template.c:69: error: 't_pargs' undeclared (first use in this function)
> template.c:69: error: (Each undeclared identifier is reported only once
> template.c:69: error: for each function it appears in.)
> template.c:69: error: expected ';' before 'pa'
> template.c:75: error: 't_topology' undeclared (first use in this function)
> template.c:75: error: expected ';' before 'top'
> template.c:76: error: 'STRLEN' undeclared (first use in this function)
> template.c:77: error: 't_trxframe' undeclared (first use in this function)
> template.c:77: error: expected ';' before 'fr'
> template.c:78: error: 'rvec' undeclared (first use in this function)
> template.c:78: error: 'xtop' undeclared (first use in this function)
> template.c:79: error: 'matrix' undeclared (first use in this function)
> template.c:79: error: expected ';' before 'box'
> template.c:81: error: 'TRX_READ_X' undeclared (first use in this function)
> template.c:83: error: 't_filenm' undeclared (first use in this function)
> template.c:83: error: expected ';' before 'fnm'
> template.c:90: error: 'stderr' undeclared (first use in this function)
> template.c:94: error: 'PCA_CAN_TIME' undeclared (first use in this
> function)
> template.c:94: error: 'PCA_CAN_VIEW' undeclared (first use in this
> function)
> template.c:95: error: 'fnm' undeclared (first use in this function)
> template.c:95: error: 'pa' undeclared (first use in this function)
> template.c:95: error: 'NULL' undeclared (first use in this function)
> template.c:103: error: 'efTPS' undeclared (first use in this function)
> template.c:103: error: 'top' undeclared (first use in this function)
> template.c:103: error: 'box' undeclared (first use in this function)
> template.c:103: error: 'TRUE' undeclared (first use in this function)
> template.c:110: warning: incompatible implicit declaration of built-in
> function 'printf'
> template.c:111: warning: incompatible implicit declaration of built-in
> function 'exit'
> template.c:114: warning: incompatible implicit declaration of built-in
> function 'printf'
> template.c:118: error: 'efTRX' undeclared (first use in this function)
> template.c:118: error: 'fr' undeclared (first use in this function)
> template.c:127: error: 'XX' undeclared (first use in this function)
> template.c:127: error: 'YY' undeclared (first use in this function)
> template.c:127: error: 'ZZ' undeclared (first use in this function)
> make: *** [template] Error 1
>
Please help me to complile template.
Thanks in advance.
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