[gmx-users] gromacs 4.0.3 tests validations

David van der Spoel spoel at xray.bmc.uu.se
Thu Feb 12 16:51:02 CET 2009

Justin A. Lemkul wrote:
> Tru Huynh wrote:
>> On Thu, Feb 12, 2009 at 09:19:29AM +0100, Ran Friedman wrote:
>>> Hi,
>>> I think the tests for pdb2gmx are outdated. Most fail due to warning(s)
>>> while running grompp, which were allowed with older versions.
>>> I'm not sure who maintains this tests - maybe a new version is due.
>> thanks for the reply.
>> Any idea for the parallel runs?
> These may not be relevant either.  There are a ton of new features 
> between 3.3.x and 4.0.x, so I would agree that probably a new test set 
> would be needed.
There is now an updated version of the test set that will work with 
4.0.4 once it comes out. I had to change some stuff in the force field 
files (encads) to get rid of the pdb2gmx warnings. DOwnload from


> -Justin
>> Tru
>> _______________________________________________
>> gmx-users mailing list    gmx-users at gromacs.org
>> http://www.gromacs.org/mailman/listinfo/gmx-users
>> Please search the archive at http://www.gromacs.org/search before 
>> posting!
>> Please don't post (un)subscribe requests to the list. Use the www 
>> interface or send it to gmx-users-request at gromacs.org.
>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php

David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

More information about the gromacs.org_gmx-users mailing list