[gmx-users] problem in creating topol.tpr file

[Tsjerk Wassenaar]

Read for yourself. Think for yourself. If we are to answer a question,
we want to know that the receiver is capable of reading (the answer)
and to comprehend (the answer). It's up to you to show that you are so
capable (by showing you've read the output and thought it over) that
answering your questions is not a waste of time. Now, if you fail to
comprehend the error messages shown, you're in the wrong business.
We're not a substitute for your brains... we might at most be regarded
an extension.

Tsjerk

On Thu, Feb 26, 2009 at 1:03 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
>
>
> nitu sharma wrote:
>>
>> Dear All,
>>
>>                    I want to run the gromacs 4.0.3 but I am unable in
>> creating topol.tpr file when I put the grommp command it shows error  like
>> this
>>
>> "Program grompp, VERSION 4.0.3
>> Source code file: gmx_fatal.c, line: 481
>>
>> Fatal error:
>> Too many warnings (1), grompp terminated.
>> If you are sure all warnings are harmless, use the -maxwarn option."and
>> after putting the command  "gmxdump -s topol.tpr" the output shows is -
>>
>> "Program gmxdump, VERSION 4.0.3
>> Source code file: gmxfio.c, line: 736
>>
>> Can not open file:
>> topol.tpr"
>>
>> could you please let me know about what problem is existing and what could
>> be the solution of this problem.
>>
>
> Surely grompp has printed what the warning was (as it did in a previous
> message you sent).  Read the warning, fix whatever  it is, and try again.
>
> Certainly gmxdump won't work, because topol.tpr never got created.
>
> -Justin
>
>> Thank you very  much in advance.
>>
>> Nitu Sharma
>>
>> Structural Biology lab
>> Schoolof life Sciences
>> Jawaherlal nehru university
>> New Delhi, India
>>
>>
>>
>>
>>
>>
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>>
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>
> --
> ========================================
>
> Justin A. Lemkul
> Graduate Research Assistant
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
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