[gmx-users] x2top_d running for too long

Mark Abraham Mark.Abraham at anu.edu.au
Wed Jun 10 09:23:15 CEST 2009

vivek sharma wrote:
> Hi All,
> I am trying to generate the topology file for some molecule using 
> x2top_d. I have fired the command as:
> */x2top_d -f Bromo-WR99210.pdb -o Bromo-WR99210.top -r Bromo-WR99210.rtp
> /*This is executing from last 16 hours!!!!, I dont know whether it takes 
> this much time or is there any problem with my run.
> Can anybody give an idea of why the run is taking too long ?

Something is broken. There is no need to run x2top in double-precision, 
but this should not be the problem.


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