[gmx-users] problem in dna-protein simulation

[nitu sharma]

Dear all,

                    i am trying to simulation of dna-protein complex using
gromacs with amber port . I am using amber99 port with gromacs-4.0.3
version. I am facing problem in running pdb2gmx command .The error comes
like this-
-------------------------------------------------------
Program pdb2gmx, VERSION 4.0.3
Source code file: resall.c, line: 426

Fatal error:
Residue 'T' not found in residue topology database

Can anyone suggest me how  can I overcome this problem .

Thanks a lot in advance.

Nitu sharma
Jawaherlal Nehru University
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090616/704b2207/attachment.html>