[gmx-users] problem in dna-protein simulation

[Justin A. Lemkul]

nitu sharma wrote:
> Dear all,
> 
>                     i am trying to simulation of dna-protein complex 
> using gromacs with amber port . I am using amber99 port with 
> gromacs-4.0.3 version. I am facing problem in running pdb2gmx command 
> .The error comes like this-
> -------------------------------------------------------
> Program pdb2gmx, VERSION 4.0.3
> Source code file: resall.c, line: 426
> 
> Fatal error:
> Residue 'T' not found in residue topology database
> 
> Can anyone suggest me how  can I overcome this problem .
> 

http://oldwiki.gromacs.org/index.php/Errors#Residue_.27XXX.27_not_found_in_residue_topology_database

-Justin

> Thanks a lot in advance.
> 
> Nitu sharma
> Jawaherlal Nehru University
> 
> 
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-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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