[gmx-users] mpi mdrun
jayant.james at gmail.com
Thu Jun 18 04:25:15 CEST 2009
Thanks for the tip I got it the mpi mdrun running on my quad core machine. I
just have one small clarification. In the output file md.log I see this
"Started mdrun at node (0)"
I monitor my processor's load using gkrellm to see how many are running.
When I started the mdrun ( mpirun -np 4 mdrun ....) I specified 4 processors
and gkrellm displays the four processors running to full capacity but why
does the output in md.log give the above message.
I am wondering if I missed out some thing !!
On Tue, Jun 16, 2009 at 2:47 PM, Mark Abraham <Mark.Abraham at anu.edu.au>wrote:
> jayant james wrote:
>> Hi !!
>> I am attempting to install mpi mdrun such that I can use all four
>> processors of my quad core system. But I keep running into this problem!! My
>> operating system is Suse 10.1.
>> (cd .libs && rm -f libgmxpreprocess_mpi.la <
>> http://libgmxpreprocess_mpi.la> && ln -s ../libgmxpreprocess_mpi.la <
>> http://libgmxpreprocess_mpi.la> libgmxpreprocess_mpi.la <
>> make: *** No rule to make target `../mdlib/libmd_mpi.la <
>> http://libmd_mpi.la>', needed by `mdrun'. Stop.
>> make: Leaving directory `/usr/local/gromacs-4.0.3/src/kernel'
>> I would appreciate help/suggestions in my installation.
> Don't install in root filespace. Unpack the distribution in your own home
> directory, configure, make, and then switch to root for "make install".
> Also, why bother installing a version that's months old?
> gmx-users mailing list gmx-users at gromacs.org
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the www interface
> or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
Jayasundar Jayant James
-------------- next part --------------
An HTML attachment was scrubbed...
More information about the gromacs.org_gmx-users