[gmx-users] mpi mdrun

Mark Abraham Mark.Abraham at anu.edu.au
Tue Jun 16 23:47:55 CEST 2009

jayant james wrote:
> Hi !!
> I am attempting to install  mpi mdrun such that I can use all four 
> processors of my quad core system. But I keep running into this 
> problem!! My operating system is  Suse 10.1.
> (cd .libs && rm -f libgmxpreprocess_mpi.la <http://libgmxpreprocess_mpi.la> && ln -s ../libgmxpreprocess_mpi.la <http://libgmxpreprocess_mpi.la> libgmxpreprocess_mpi.la <http://libgmxpreprocess_mpi.la>)
> make[1]: *** No rule to make target `../mdlib/libmd_mpi.la <http://libmd_mpi.la>', needed by `mdrun'.  Stop.
> make[1]: Leaving directory `/usr/local/gromacs-4.0.3/src/kernel'
> I would appreciate help/suggestions in my installation.

Don't install in root filespace. Unpack the distribution in your own 
home directory, configure, make, and then switch to root for "make 
install". Also, why bother installing a version that's months old?


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