[gmx-users] non squares box

[Omer Markovitch]

Thanks.
I am not sure how this addresses my problem. I am getting "broken" structure
at the end of the MD (in confout.gro), and want to be sure that GMX treat it
correctly during the MD.
--Omer.

Koby Levy research group,
Weizmann Institute of Science.
http://www.weizmann.ac.il/sb/faculty_pages/Levy/


On Sun, Jun 21, 2009 at 13:42, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> To check your periodicity use genconf:
>
> genconf -f in.pdb -o out.pdb -nbox 2 2 2
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090621/384c0c4f/attachment.html>