[gmx-users] genbox error at futil.c

[Justin A. Lemkul]

iulek wrote:
> Hi!
> 
>     I am a very beginner, trying to make some dynamics of a protein in a 
> water box, after doing some (web) tutorials. I googled first for this 
> (possibly simple) error, found one reference, but cannot see it, 
> possibly because the gromacs site is under changes.
>     I ran pdb2gmx and editconf. Then at genbox I get the error:
> 
> "
> Processing topology
> 
> -------------------------------------------------------
> Program genbox, VERSION 4.0.5
> Source code file: futil.c, line: 330
> 
> File input/output error:
> RecA_nat_b4em.top
> -------------------------------------------------------
> "
>  

So is the topology in the current working directory?

-Justin


>     The command line is:
>  > genbox -cp ${MOL}_in_box.gro -cs -p ${MOL}_b4em.top -o 
> ${MOL}_b4em.gro << eof > genbox.log
> eof
>     with variable MOL set to RecA_nat
>     The file RecA_nat_b4em.gro is output without problems.
>     I am using gromacs 4.0.5 under openSuSE 11.1.
>     Thanks,
> 
> Jorge
> 
> 
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-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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