[gmx-users] What much time does DSSP need to analyze lysozyme?

[Chih-Ying Lin]

Hi

1. After compiling, the two following files are created.
dsspcmbi
dsspcmbi.exe


2. The path of the DSSP file is   /usr/local/bin/DSSP.
Both dsspcmbi and dsspcmbi.exe  are in the file /usr/local/bin/DSSP.



3. So, the last step i type the command in my .profile.
setenv dssp /usr/local/bin/DSSP
export dssp= /usr/local/bin/DSSP
export PATH=$PATH:$DSSP

Is it correct ?


4. I also have Gromacs in my MAC.
And I type the following command.

do_dssp -f 6LYZ-MD.xtc -s 6LYZ-MD.tpr -o secondary-structure.xpm -sc
secondary-structure.xvg

For running 5 minutes, the following files are created and DSSP still
keep running.
Is anything wrong here?


                dd0JIeYC
               dd2n5lZ5
                dd6Lt1VG
               ddCKhtbw
            ddH0Kx1A
             ddH1OHJw
             ddH7I7Jq
            ddHu6YEP
              ddMHmy3S
           ddOKw3Hm
           ddORkwCw
            ddZmd6yo
              ddfQILug
               ddfk4Z93
               ddhKugF3
             ddiE75mM
             ddk2Smm9
            ddnfIvcP
              ddrcPgKr
               ddumjJA5
             ddv9BjJk
             ddw1Q7xl



Thank you
Lin