[gmx-users] What much time does DSSP need to analyze lysozyme?
chihying2008 at gmail.com
Sun Jun 28 05:52:57 CEST 2009
1. After compiling, the two following files are created.
2. The path of the DSSP file is /usr/local/bin/DSSP.
Both dsspcmbi and dsspcmbi.exe are in the file /usr/local/bin/DSSP.
3. So, the last step i type the command in my .profile.
setenv dssp /usr/local/bin/DSSP
export dssp= /usr/local/bin/DSSP
Is it correct ?
4. I also have Gromacs in my MAC.
And I type the following command.
do_dssp -f 6LYZ-MD.xtc -s 6LYZ-MD.tpr -o secondary-structure.xpm -sc
For running 5 minutes, the following files are created and DSSP still
Is anything wrong here?
More information about the gromacs.org_gmx-users