[gmx-users] error during solvation of system
Mark.Abraham at anu.edu.au
Tue May 5 09:25:56 CEST 2009
nitu sharma wrote:
> Dear all
> I am doing simulation of membrane protei in lipid bilayer
> after making complex of protein and lipid bilayer I was going to step
> genbox to solvate the system but when I was doing this the one error
> came like this-
> Program genbox, VERSION 4.0.3
> Source code file: smalloc.c, line: 179
> Fatal error:
> Not enough memory. Failed to realloc 1008588692 bytes for nlist->jjnr,
> (called from file ns.c, line 499)
> "She Needs Cash to Buy Aspirine For Her Pain" (LIVE)
> : Cannot allocate memory
> What is this problem .
> Is it related with system memory on which i am working or it related
> with gromacs .
> If anybody have idea about this please suggest me something.
Update to 4.0.4. Otherwise, the code has tried to allocate a gigabyte of
memory, which wasn't available for some reason. Check the sizes of your
inputs, try another computer system, free up system memory, increase
system virtual memory.
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