[gmx-users] How to create .pdb files?

Justin A. Lemkul jalemkul at vt.edu
Mon May 11 21:11:56 CEST 2009

Joseph Johnson wrote:
> I have tried to export .pdb files from ChemBio3D Ultra but it does not 
> do a very good job.  What is the best or simply a good, reliable method 
> of generating a .pdb file?

If it is simply a formatting issue, you can fix it yourself using the PDB format 


If the software just isn't well-suited to this purpose, I find that the PRODRG 
server is useful for such purposes.


> Thanks for your help :)
> Casey
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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